Browsers were the original TLS trust store vendors. Operating systems started shipping trust stores because their OS came with a browser, not because they were the natural root of trust. Browsers also have tools to update revocation near-live, while operating systems lag behind by hours, or days in this case.

For your tool, remember to nuke Windows' automated certificate authority updates (separate from normal Windows updates) and possibly the automated intermediary cache. Microsoft publishes a list of trusted CAs/intermediaries periodically and they get automatically applied to Windows so websites don't need to send the full cert chain during TLS negotiation, and it has a tendency to cache trusted intermediaries as well.

Mozilla's trust store is one of the first to get updated when a revocation happens, as well as Google's CRLsets. Downloading full CRLs repeatedly would be a waste of time and bandwidth, that's why there's a specific distribution method for CA updates. I would extend your tool with a daemon that checks for revocation automatically, so you don't accidentally eMudhra yourself while browsers and the OS get updates next time something like this happens.